| Date |
Location |
Presenter |
Topic/Paper |
| 09/09 |
McDonnell |
|
Organizational Meeting |
| 09/16 |
McDonnell |
Richard Souvenir |
Eskin and Pevzner 2002, "Finding Composite Regulatory Patterns in
DNA Sequences", Proceedings of ISMB '02, 354-363. |
| 09/23 |
McDonnell |
Aaron Tenney |
Pavlidis et al 2001, "Promoter region-based classification of genes,"
Proceedings of Pacific Symposium on Biocomputing '01, 151-163.
|
| 09/30 |
McDonnell |
Chaochun Wei |
Martin C. Frith et al, 2002, "Statistical significance of clusters of
motifs represented by position specific scoring matrices in nucleotide
sequences", Nucleic Acids Research, Vol.30, 3214-3224
|
| 10/07 |
Cupples II |
Yiing Lin |
Rebeiz M et al. (2002). "SCORE: A computational approach to the
identification of cis-regulatory modules and target genes in
whole-genome sequence data". PNAS 99:9888.
|
| 10/14 |
McDonnell |
Ting Wang |
Scoring Pairwise Genomic Sequence Alignments
F. Chiaromonte, V.B. Yap, and W. Miller; Pacific Symposium on Biocomputing
7:115-126 (2002).
|
| 10/21 |
McDonnell |
Billy Li |
Peter Arndt, Christopher Burge, and Terence Hwa (2002) "DNA sequence
evolution with neighbor-dependent mutation" Proceeding of the Sixth
Annual International Conference on Computational Biology pgs 32 - 38
|
| 10/28 |
McDonnell |
Evan Keibler |
Jia Li and Webb Miller (2002) "Significance Of inter-species matches when
evolutionary rate varies" Proceeding of the Sixth Annual International
Conference on Computational Biology pgs 216 - 224
|
| 11/04 |
Cupples II |
Aphreka Jemison |
Dmitry Korkin and Lev Goldfarb (2002) "Multiple genome rearrangement: a general
approach via the evolutionary genome graph" Bioinformatics Vol. 18 pg S303-S311
|
| 11/11 |
McDonnell |
Magnus Bjursell |
"Interrogating the human genome using uninterpreted mass spectrometry data"
Choudhary et al, Proteomics 1(5): 651-667, 2001.
|
| 11/18 |
McDonnell |
Tom Joseph |
"Mutation-tolerant protein identification by mass spectrometry"
Pevzner, Dancik, and Tang, RECOMB 2000 pp 231-236
|
| 11/25 |
McDonnell |
Ben Westover |
"De novo peptide sequencing via tandem mass spectrometry"
Dancik, Addona, Clauser, Vath, and Pevzner, JCB 6:327-42, 1999
|
| 12/02 |
Cupples II |
Sean Eddy |
"In silico simulations reveal that replicators with limited
dispersal evolve towards higher efficiency and fidelity"
P. Szabo et al Nature 420:340-343 2002
|
| 12/09 |
McDonnell |
|
|