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| The following programs were developed in our lab and are available for download |
| Consensus Server |
Currently down, working to repair. Web-based graphical interface for consensus, wconsensus, & consensus-vio |
| Consensus |
Find DNA and protein patterns |
| Patser |
Patser find locations of patterns in sequence |
| Landscape |
Build gene landscape for intron and exon prediction |
| GeneParser |
Find genes in a genome |
| PromFD |
Predict promoter regions in DNA sequences |
| Co-Bind |
Identify target sites for cooperatively binding transcription factors |
| PhyloCon |
Phylogenetic Consensus, combining phylogenetic data with coregulated genes to identify regulatory motifs |
| PhyloNet |
Motif Discovery at Whole Genome Level |
| MatAlign |
Matrix Aligner |
| comRNA |
A common RNA secondary structure predictor |
| LOCUS |
Locus (Length Optimized Characterization of Unknown Spliceforms) evidence-based gene finding algorithm |
| CRML |
Web interface for locating muscle-specific regulatory modules in C. elegans sequences. |
| Probe Select |
Probe Select |
| RNASampler |
A sampling based algorithm for RNA secondary structure prediction. |
