Debraj GuhaThakurta: Co-Bind Program Download

Co-Bind Program

Recently developed program for identification of target sites for cooperatively binding transcription factors. The program, called Co-Bind (for COoperatively BINDing factors), is available for Unix SunOS 5.6. The program can be downloaded (see below) or be obtained through an email request to {dg, stormo}@ural.wustl.edu

Reference: Identifying target sites for cooperatively binding factors. GuhaThakurta, D., and Stormo, G.D. (2001) Bioinformatics,17, 608-621. PDF

Download everything in one compressed file: Co-Bind.tar.gz. 1.3 Mb. For Unix SunOS 5.6. Has binaries, and associated Perl scripts, sample data-sets and readme files.

Source code for Co-Bind: Co-Bind_src_release_06.01.tar.gz . To compile, uncompress and then type 'make' in command line.

NOTE: To download any file press down the shift key and then left-click on the link.

Co-Bind version 1 (April 02 2001) executables:

1. Co-Bind readme file. This file has running instructions for Co-Bind program.

2. Co-Bind executable for Unix SunOS 5.6.

3. Co-Bind executable for RedHat Linux 7.1

4. Co-Bind executable for Unix Tru64 (a slightly older version, To compile most recent version, doanload the source code and re-compile)

Sample files for test running Co-Bind and one example of a runs:

1. Sample training set sequences in FASTA format.

2. Sample background file in FASTA format.

3. Sample alphabet file.

4. Sample results file (25 runs).

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