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Summary of Putative RNA Structural Motifs identified in Shewanella Oneidensis
(The online supplementary material for Discovering cis-Regulatory RNAs in Shewanella Genomes by Support Vector Machines, PLoS Computational Biology 2008)
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The anchor genome (s) |
S. oneidensis |
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Other genomes |
At least 3 other Shewanella species |
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| All in One (all 3 scan widows combined) | 1002 | ||
| Scan Window I | UTR -150 ~ 20* | 1002 | |
| Scan Window II | UTR -200 ~ -50 | 907 | |
| Scan Window III | UTR -250 ~ -100 | ||
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* Translation start site is +1. Click the links to access the detailed information for all prediction. |
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© 2008 Xing Xu, Yongmei Ji and Gary Stormo, Washington University School of Medicine.