Shewanella oneidensis cis-Regulatory Element Database

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Input motif profile:

 

  

Paste a motif profile

Or choose a local file

 Example: The format of a motif profile
A |  134    0    4    6    0   94   43
C |   28  186   10    0   12   24   13
G |   30    4    4  186    9    8    2
T |    0    2  174    0  171   66  134
 

Parameters:

  
 

ALLR cutoff: (The higher the ALLR score, the more similar the two motif profiles, usually we use 7.5)

Overlapping percentage cutoff of the input motif and the matching motif (usually, we use 75%)

 

  
 

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© 2008 Xing Xu, Jiajian Liu and Gary Stormo, Washington University School of Medicine.